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The first time I snuck zucchini into muffins, I braced for complaints. But instead? Silence… followed by crumbs and second helpings. These Healthy & Moist Chocolate Zucchini Muffins are soft, rich, and fudgy—everything a good chocolate treat should be—with a hidden dose of veggies. Perfect for breakfast, snacks, or dessert, they’re kid-approved and completely free of refined sugar. If you’re craving something sweet but want to keep things light and wholesome, this is your new go-to recipe.
The Story & Intro
Why Chocolate Zucchini Muffins Are a Game-Changer
Zucchini does something magical in baked goods—it keeps them incredibly moist without adding a strong flavor. When combined with cocoa powder and melty chocolate chips, you get a treat that feels indulgent but is actually good for you. These muffins are made with whole wheat flour, sweetened naturally with maple syrup, and are totally dairy-free.
Healthy and Kid-Friendly
These muffins are packed with zucchini, but you’d never know it. That’s why they’re one of my favorite healthy sweets recipes. They’re ideal for lunchboxes, post-workout snacks, or an afternoon pick-me-up. And you don’t need any fancy equipment—just a mixing bowl and muffin tin.
What You Need for the Best Zucchini Muffins
Simple, Wholesome Ingredients
- Zucchini – adds moisture and fiber
- Unsweetened cocoa powder – rich chocolate flavor
- Maple syrup – natural sweetness
- Eggs – structure and moisture
- Whole wheat flour – adds a fiber boost
- Coconut oil or olive oil – healthy fats
- Baking soda and powder – the right rise
- Dark chocolate chips – optional but highly recommended!
Why They’re Healthy
Each muffin is low in refined sugar, contains healthy fats, and sneaks in vegetables. Plus, they’re easily made dairy-free and can be adapted for gluten-free diets using a 1:1 baking blend.
Tips for Moist, Fudgy Muffins Every Time
Grate Zucchini Finely and Don’t Squeeze
Use the fine side of a box grater so the zucchini melts into the batter. Don’t squeeze the water out—it adds moisture that makes these muffins soft and tender.
Mix Batter Gently
Overmixing can lead to dense muffins. Stir just until combined. The batter will be thick and fudgy—that’s what you want.
Step-by-Step Chocolate Zucchini Muffin Recipe
Ingredients:
- 1 ½ cups finely grated zucchini (about 1 medium zucchini)
- 2 eggs
- ⅓ cup melted coconut oil or olive oil
- ½ cup pure maple syrup
- 1 tsp vanilla extract
- ½ cup unsweetened cocoa powder
- 1 cup whole wheat flour
- ½ tsp baking powder
- ½ tsp baking soda
- ¼ tsp salt
- ½ cup dark chocolate chips (optional)
Instructions:
- Preheat oven to 350°F (175°C). Line a 12-cup muffin tin with liners or grease lightly.
- In a large bowl, whisk together eggs, oil, maple syrup, and vanilla.
- Stir in grated zucchini.
- Add cocoa powder, flour, baking powder, baking soda, and salt. Stir gently until just combined.
- Fold in chocolate chips if using.
- Divide batter evenly among muffin cups, filling each about ¾ full.
- Bake for 18–22 minutes, or until a toothpick comes out with moist crumbs.
- Let cool in pan for 5 minutes, then transfer to a rack.

Healthy & Moist Chocolate Zucchini Muffins
- Total Time: 30 minutes
- Yield: 12 muffins 1x
- Diet: Vegetarian
Description
Fudgy and healthy chocolate zucchini muffins made with whole wheat flour, maple syrup, and cocoa powder. Moist, naturally sweet, and perfect for a guilt-free snack or dessert.
Ingredients
1 ½ cups finely grated zucchini (about 1 medium zucchini)
2 eggs
⅓ cup melted coconut oil or olive oil
½ cup pure maple syrup
1 tsp vanilla extract
½ cup unsweetened cocoa powder
1 cup whole wheat flour
½ tsp baking powder
½ tsp baking soda
¼ tsp salt
½ cup dark chocolate chips (optional)
Instructions
1. Preheat oven to 350°F (175°C) and line a muffin tin.
2. In a large bowl, whisk eggs, oil, maple syrup, and vanilla.
3. Stir in grated zucchini.
4. Add cocoa powder, flour, baking powder, baking soda, and salt. Stir just to combine.
5. Fold in chocolate chips if using.
6. Spoon batter into muffin cups, filling ¾ full.
7. Bake 18–22 minutes, until toothpick has moist crumbs.
8. Cool for 5 minutes, then transfer to a wire rack.
Notes
Do not squeeze zucchini—its moisture keeps muffins soft.
Use flax eggs for egg-free version.
Muffins freeze well for up to 2 months.
- Prep Time: 10 minutes
- Cook Time: 20 minutes
- Category: Breakfast
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 muffin
- Calories: 170
- Sugar: 8g
- Sodium: 160mg
- Fat: 9g
- Saturated Fat: 3g
- Unsaturated Fat: 5g
- Trans Fat: 0g
- Carbohydrates: 20g
- Fiber: 3g
- Protein: 4g
- Cholesterol: 35mg
Keywords: Healthy Chocolate Zucchini Muffins, Chocolate Zucchini, Healthy Dessert
How to Store & Serve These Muffins
Storage Tips
Keep muffins in an airtight container at room temperature for up to 3 days. Refrigerate for up to 1 week. They also freeze beautifully—just thaw overnight in the fridge or microwave for 20 seconds.
Best Ways to Enjoy
- Warm with a smear of almond butter
- Crumbled over Greek yogurt
- Packed in lunchboxes
- As a healthy dessert with a glass of almond milk
FAQ About Chocolate Zucchini Muffins
Can I make these gluten-free?
Yes! Use a 1:1 gluten-free baking flour blend in place of whole wheat flour.
Can I use honey instead of maple syrup?
Absolutely. Just use the same amount.
What can I substitute for eggs?
Try 2 flax eggs (2 tbsp flaxseed + 6 tbsp water). Let sit for 5 minutes before using.
Can I reduce the oil?
Yes, you can use ¼ cup oil and add ¼ cup plain Greek yogurt or applesauce.
Do they taste like zucchini?
Not at all. The chocolate and maple syrup completely mask the veggie taste—promise!